Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/c9b036ef4c6ddb8545718e5ea3747fc20c51ebfbcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAAGACAAGTCAATCA-2295_D02, TGCAGGCTCTGGCATG-2295_D02, CATGCAAGTGAGACTC-2295_D02, TATCGCGAGCACAGGG-2295_D02, TTTACGCGTTATGTGG-2295_D02 (top 5 of 3828 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb.gz 2.03 GB fbeb7de9dd2da6035b8f89e78142ba71
c9b036ef4c6ddb8545718e5ea3747fc20c51ebfb.gz.tbi 1.07 MB bd4d47f464aca845a41b09c250c3c5d5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB fa5da964993ffe676fc1bd115c7c45a0
statistics/