Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cc261cca7def7c500a74249b493c56c00247da04content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cc261cca7def7c500a74249b493c56c00247da04
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGCAAATCACCTGCCT-2508_A07, ATGCCTGAGGAAACTG-2508_A07, GACGTAAAGTAGCGGG-2508_A07, GAGGCCTTCCGCAAGC-2508_A07, GCAATAGAGCTGTACG-2508_A07 (top 5 of 5406 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
cc261cca7def7c500a74249b493c56c00247da04.gz 2.78 GB 22a97086fab9290b4d72980727d4788c
cc261cca7def7c500a74249b493c56c00247da04.gz.tbi 1.28 MB 0e163de97d5e5c19bd77216a327c3236
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 723869711ebd88138a55a426ab7b9ea3
statistics/