Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cd0776fdb909d9aed8a553fbe8c48c567cce90c8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cd0776fdb909d9aed8a553fbe8c48c567cce90c8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCGTTAGCAGTAAGTA-2277_C04, AATCCCTGTTAGGTTG-2277_C04, AAAGCCCGTAATCGCA-2277_C04, CCTTGTTCAAGGTGCA-2277_C04, CATTGCGAGTTTCCGC-2277_C04 (top 5 of 1628 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
cd0776fdb909d9aed8a553fbe8c48c567cce90c8.gz 1.22 GB de935b1f3a38645926e29221222bd2df
cd0776fdb909d9aed8a553fbe8c48c567cce90c8.gz.tbi 866.6 KB 3496514feb69cd63e56bcd18db4b0442
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 5430e2560c1c20ce13d32046a3806276
statistics/