Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/cd124e455c046ce14e80935d78fc6b6dc5f9337fcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: cd124e455c046ce14e80935d78fc6b6dc5f9337f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTCAATAAGGCCGGAA-2355_A02, AGGCTAAAGGCAAGTA-2355_A02, TGTATCGCAAGGTGCA-2355_A02, TGGAACAAGCCACAAT-2355_A02, AATAGAGGTCATCATC-2355_A02 (top 5 of 5092 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
cd124e455c046ce14e80935d78fc6b6dc5f9337f.gz 2.36 GB c46a1ceb83678337bf9015dcfe0cd7cf
cd124e455c046ce14e80935d78fc6b6dc5f9337f.gz.tbi 1.16 MB 5084eefdcf06a223bf8ca4e32b3bc441
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 4f5a221e011811bb7cbe062121c59475
statistics/