Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ce33cb198c15ce3065e8bd86c86ddd87ee9e4756content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ce33cb198c15ce3065e8bd86c86ddd87ee9e4756
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCAATAGAGAGCCGCT-2471_B04, GCCAGGAAGTTGTCAA-2471_B04, TAGCGGCTCATTGTCT-2471_B04, CGGGACAAGCCGGTAC-2471_B04, ACTCGCGCATGTTTGG-2471_B04 (top 5 of 4838 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
ce33cb198c15ce3065e8bd86c86ddd87ee9e4756.gz 1.31 GB 16e39321940ac9e9cdb73b17e5b26d6e
ce33cb198c15ce3065e8bd86c86ddd87ee9e4756.gz.tbi 873.44 KB 1ed3b9c286e3dea6e454065b1549251f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 2b53730ea9d294bc9ce7281fd0851d10
statistics/