Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d6f4b35170f81a12f05d0971c4c0900c8b3a40f0content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d6f4b35170f81a12f05d0971c4c0900c8b3a40f0
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGCAAGCAAGTGTTT-2349_B08, GCTTTACGTATCTGGA-2349_B08, GGCATGGAGGAAGCAC-2349_B08, CAAAGTGAGACAGGTA-2349_B08, AACTGTTCAGCTTACA-2349_B08 (top 5 of 4537 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d6f4b35170f81a12f05d0971c4c0900c8b3a40f0.gz 2.39 GB e2987b23577ec99ea4756b9f62efb9a5
d6f4b35170f81a12f05d0971c4c0900c8b3a40f0.gz.tbi 1.15 MB 6a6e0b2bf4683463627cf2519ff17ae8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 62bfa0ab404d38ddbd474cbaa11fbecf
statistics/