Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d7e27e29f08b919b752974aa72fe48fd020938e3content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d7e27e29f08b919b752974aa72fe48fd020938e3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCATTGTGTACCAGGT-930_B05, CCGGTTAAGTAGCGGG-930_B05, GACCTCAAGGTCAAAG-930_B05, CTTAAGGGTTGTTCAC-930_B05, GCTAGTGTCATCCTCA-930_B05 (top 5 of 1077 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d7e27e29f08b919b752974aa72fe48fd020938e3.gz 667.22 MB a706be57f6aec79f1134f2c87fbf6757
d7e27e29f08b919b752974aa72fe48fd020938e3.gz.tbi 685.26 KB 017651f0d1e7dad75996c35b49cadae6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 95a3399759ab4527d062df8205b5dc4b
statistics/