Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d8f6b735c350b50bdf79f9253ffceb19871b8b8acontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d8f6b735c350b50bdf79f9253ffceb19871b8b8a
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTTGCGCAAAGGTAC-2393_C06, GCCAGGTTCCCATAAA-2393_C06, CTCCGGACACCTCAGG-2393_C06, GAAGGCCCACTTGTTC-2393_C06, CTCTCACAGCTCGCTT-2393_C06 (top 5 of 1454 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d8f6b735c350b50bdf79f9253ffceb19871b8b8a.gz 258.43 MB 4963939ab7c9b7d57c3e1010d782f49f
d8f6b735c350b50bdf79f9253ffceb19871b8b8a.gz.tbi 577.21 KB de4a3970f234b53e12c1ad4be4935d4d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB c707bb64ff87a16b73f68500f1a5a4c1
statistics/