Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d90171e6882759a4e1b77f9d9ab4216d67127c00content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d90171e6882759a4e1b77f9d9ab4216d67127c00
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTCCTGCAGGCGAGT-930_A05, GCATATATCCTCACAC-930_A05, AGTGCGGAGGAACGGT-930_A05, ACTAACTCAGGCGAGT-930_A05, ACCAAGTTCCGTAAAC-930_A05 (top 5 of 1637 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d90171e6882759a4e1b77f9d9ab4216d67127c00.gz 1.17 GB 5700973fcb36a4876e72258e80ef32c4
d90171e6882759a4e1b77f9d9ab4216d67127c00.gz.tbi 834.49 KB 596c19c1de6180876d95355d6ebf3670
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6960430144e03c93715953c829e622d0
statistics/