Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/d928bc14055bf20a5f89801ee58a0ccdf210a045content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d928bc14055bf20a5f89801ee58a0ccdf210a045
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGGTTTGAGCTTTGTT-1001_B06, GCAAGTCGTGAGCACT-1001_B06, CAAATCATCGTTCACC-1001_B06, GTGTGTTAGTTTGCGG-1001_B06, ATGGCTAGTCAGTAAT-1001_B06 (top 5 of 3599 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d928bc14055bf20a5f89801ee58a0ccdf210a045.gz 1.05 GB 488710fa829f0afd4c6fb8808ad0727f
d928bc14055bf20a5f89801ee58a0ccdf210a045.gz.tbi 788.29 KB d4678b7dc3803ea51ed9675509662669
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 1563adb057876aa2e9b5ab6534c65d69
statistics/