Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/df42bd3814e189cb1624b583d99d53e926f69b6bcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: df42bd3814e189cb1624b583d99d53e926f69b6b
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGTCATAAGTGAGCGG-847_B04, GTGCTGATCGGGACCT-847_B04, ACGTCCTTCCCAGTAG-847_B04, AGGTACGCAATGCCTA-847_B04, GTGATCAGTTATCGAG-847_B04 (top 5 of 2191 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
df42bd3814e189cb1624b583d99d53e926f69b6b.gz 1.7 GB c80a008185dc1965e1232ed522c8425c
df42bd3814e189cb1624b583d99d53e926f69b6b.gz.tbi 985.38 KB d6546c4595bb360c5c55bbb776f6125e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 373e8a1d6d156801bc6b06e442275d6f
statistics/