Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e081c2f03d42db88218ae7abf1d52c37ee6da3e3content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e081c2f03d42db88218ae7abf1d52c37ee6da3e3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGGTGCGTGGACCTG-2355_C02, CTATTCAGTCCTTAGT-2355_C02, AAATCCGGTGCGCGTA-2355_C02, TGCTTCATCATCACTT-2355_C02, CTCCCTGAGGCGCTAC-2355_C02 (top 5 of 4011 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
e081c2f03d42db88218ae7abf1d52c37ee6da3e3.gz 2.07 GB 7a83ac624b0b47f068a6b47ab7a0aa05
e081c2f03d42db88218ae7abf1d52c37ee6da3e3.gz.tbi 1.07 MB e309dc95fee38db6a3775de24e8e58c5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 4e70b78251d590d449af6d49c2ec87c5
statistics/