Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e269dba623481bb6f19c2a4df5b523bd69a5ba4dcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e269dba623481bb6f19c2a4df5b523bd69a5ba4d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGATCAGGTTAGCGTA-2468_E02, ACCGCAATCGCTATAA-2468_E02, TAGAGCCGTTTGGTTC-2468_E02, CAACCCTTCGCAGGCT-2468_E02, CCAATATCATTGCGGT-2468_E02 (top 5 of 4300 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
e269dba623481bb6f19c2a4df5b523bd69a5ba4d.gz 2.52 GB d1290ca75a0aab31ad015ec8d0546329
e269dba623481bb6f19c2a4df5b523bd69a5ba4d.gz.tbi 1.19 MB 1b58df27271423404083fd35b67fbd26
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB cfb22ddb05eee029e533c41a63a3d384
statistics/