Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e40c7d288236f8ef3e38aa396c1aaefa83312fb8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e40c7d288236f8ef3e38aa396c1aaefa83312fb8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGTAGGAGCACAGGG-2018_A01, AGTAACGAGGTCCAAT-2018_A01, TGAACAACACGAATTT-2018_A01, TGTGATCAGCTGTCAG-2018_A01, ATTACGTCATTGTCCT-2018_A01 (top 5 of 6792 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
e40c7d288236f8ef3e38aa396c1aaefa83312fb8.gz 2.92 GB 95cb44e89483cd2e0ef0c87f6fc6d72f
e40c7d288236f8ef3e38aa396c1aaefa83312fb8.gz.tbi 1.28 MB 6706942f0b900c2c9ef05aece5e75a08
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 2bbe7e62bd9fb9dff8e49c98479e32b8
statistics/