Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e4bd2469ac71702c53edb3d4156bccd405a4aea4content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e4bd2469ac71702c53edb3d4156bccd405a4aea4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCATAAGGTTACCGGG-2368_C02, CTCGTTATCCACCCTG-2368_C02, ACCTTCATCCGGAACC-2368_C02, ATTACGTCATGAATAG-2368_C02, CTACCTCAGGTCGAGG-2368_C02 (top 5 of 3007 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
e4bd2469ac71702c53edb3d4156bccd405a4aea4.gz 1.19 GB 1047182491fd0e4ff41ea28cf7e5e07c
e4bd2469ac71702c53edb3d4156bccd405a4aea4.gz.tbi 839.87 KB 89147a021b74a887ef57b5b00f740c46
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 0413ccdd4e3cd78e6d925ed364fb9da1
statistics/