Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/e65d1857d53322a304818435ffb9a2354fbf514fcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: e65d1857d53322a304818435ffb9a2354fbf514f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATTGAAGCAGGCGAGT-2357_F03, TAGTACGGTCCTAACT-2357_F03, AGTAGGATCATTAGTG-2357_F03, GTTGGAGCAAATGCCC-2357_F03, GGCGGTAAGTTTCCGC-2357_F03 (top 5 of 4727 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
e65d1857d53322a304818435ffb9a2354fbf514f.gz 1.71 GB e05d64ab1ade5b7bf44476c451a30b47
e65d1857d53322a304818435ffb9a2354fbf514f.gz.tbi 995.79 KB 7b1a40203c61acda4afd47390fc7b1bb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 3fc330f22fa856a2bc2eb9253499a446
statistics/