Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/ef5704ee3eed96ac8f08bc7c53150ff060c9d583content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: ef5704ee3eed96ac8f08bc7c53150ff060c9d583
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AATCTTGAGGCCTAAT-1169_A01, GTAGGATCAACTCGCG-1169_A01, GAAACTGAGCCGCAAC-1169_A01, TGAGCTTAGTCCTTCA-1169_A01, AATTGTGTCTTGCAAA-1169_A01 (top 5 of 1982 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
ef5704ee3eed96ac8f08bc7c53150ff060c9d583.gz 291.78 MB a7256d6e5fdc2fddf0cca4ed166792d1
ef5704ee3eed96ac8f08bc7c53150ff060c9d583.gz.tbi 585.21 KB 597071a48dd904d781b06b534dad74a6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d762e4bfdffa1bbce68844a0ab28eff9
statistics/