Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/efb22b586b870994a08b60e0547ee50c94649a3fcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: efb22b586b870994a08b60e0547ee50c94649a3f
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCCGTAAAGTTGGCCA-1110_A07, GGGTCAACATTATGCG-1110_A07, GGTCTTTGTTAGGCTA-1110_A07, CGCTCCATCGCACAAT-1110_A07, CGACCTGCAGGTCCTG-1110_A07 (top 5 of 1056 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
efb22b586b870994a08b60e0547ee50c94649a3f.gz 241.85 MB 2531b02ff4111c156ebfefe60ed1fe0d
efb22b586b870994a08b60e0547ee50c94649a3f.gz.tbi 557.9 KB d65f997969e4162a839d02f28b75cdf2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 3520e2286b5a3da8178137bbe6b85f7c
statistics/