Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f34447476e7d1f4efb3a65a7b847b8d1e640d087content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f34447476e7d1f4efb3a65a7b847b8d1e640d087
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCTTCAATCTTAGTCT-2263_E01, TACTTGTTCCCGCCTA-2263_E01, GTTAACGGTCCTTAGT-2263_E01, AGTCCTTGTTCGGTAA-2263_E01, CAAAGTGAGCCAGTAT-2263_E01 (top 5 of 3532 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f34447476e7d1f4efb3a65a7b847b8d1e640d087.gz 1.41 GB a1b7caf8a5b393b6a69f29bc98780f57
f34447476e7d1f4efb3a65a7b847b8d1e640d087.gz.tbi 900.07 KB 2b3b05ba1da000edd3eb7a9b8129281d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 8eb92a31d828bc499a2a7a8948887953
statistics/