Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f35624a2912fde5ba50f4821349e6e9667587871content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f35624a2912fde5ba50f4821349e6e9667587871
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TACCAAATCTCACATT-2018_E01, TTAGGCCCATGGCCCA-2018_E01, GTGTAACTCGGTTTCC-2018_E01, TTGAGGCGTAGTTGGC-2018_E01, TTGCCCGTCTTGGATA-2018_E01 (top 5 of 5503 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f35624a2912fde5ba50f4821349e6e9667587871.gz 2.27 GB 05befeff0630d6802426905ddfd6e5f2
f35624a2912fde5ba50f4821349e6e9667587871.gz.tbi 1.15 MB 5e89d50f8115eaad9669a47e3ed64a34
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 839da79e62e8011cc630d6f1f6bc5ab8
statistics/