Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f5c719593351ac58d13b0cf05acd4a7d99214c97content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f5c719593351ac58d13b0cf05acd4a7d99214c97
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TACTTGTTCGATAACC-2357_D03, CCGCAAATCTTCAATC-2357_D03, ACTTCGCTCGGGACCT-2357_D03, GTACTTAAGGTTTACA-2357_D03, GTATCGCCAGGCATCT-2357_D03 (top 5 of 6105 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f5c719593351ac58d13b0cf05acd4a7d99214c97.gz 2.69 GB e79e9d8edd5878c4caacd5662ebcfcb2
f5c719593351ac58d13b0cf05acd4a7d99214c97.gz.tbi 1.25 MB 938809c6614009ad7a97767562c51065
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b5be8daa271f299cf371021e49bfe442
statistics/