Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f5d68824352c7c288af60887b276e5520e6f62cecontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f5d68824352c7c288af60887b276e5520e6f62ce
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTCCTTCTCGCTAGTG-2326_F01, ATATGCTCATTGTGGC-2326_F01, TGAGGAGGTGGGTGAA-2326_F01, GCGAAGCCACCAAAGG-2326_F01, TCAGGTTAGGCAGGTG-2326_F01 (top 5 of 4252 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f5d68824352c7c288af60887b276e5520e6f62ce.gz 2.16 GB efb70833279d6a607c0da2bf26471f93
f5d68824352c7c288af60887b276e5520e6f62ce.gz.tbi 1.14 MB 3dbabfc9855bb45304e157983e1c18f0
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 1ea26d3e700ba41ed246660c50d05ac0
statistics/