Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f68c1dfd5f514a92d83a781e1db3debe8ec2c235content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f68c1dfd5f514a92d83a781e1db3debe8ec2c235
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACAGGATCATCATGGC-2389_A04, TAGCGGCTCTCCATAT-2389_A04, CATGGATTCGAAGTGA-2389_A04, CAGGGCTTCAACAAGG-2389_A04, GTTACGCCACTTCATC-2389_A04 (top 5 of 2786 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f68c1dfd5f514a92d83a781e1db3debe8ec2c235.gz 956.14 MB 48a6e02d9973aee0ea785ab0c54135a9
f68c1dfd5f514a92d83a781e1db3debe8ec2c235.gz.tbi 764.95 KB 8cd385ddad5abdc55b82a66c8ede049e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 05f1de54e0ab61e07fe41acb1a9fc882
statistics/