Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f6f0acfa13b67fe3997a7ae77f1c6c682ae1fcf3content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f6f0acfa13b67fe3997a7ae77f1c6c682ae1fcf3
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCGCTTGCATCAGTAT-1955_C06, ATAGATGCAGGCGAGT-1955_C06, CCACTTGGTTAGCGTA-1955_C06, CAGGCTATCTCACTAT-1955_C06, GAGTGTTTCCGTGACA-1955_C06 (top 5 of 7837 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f6f0acfa13b67fe3997a7ae77f1c6c682ae1fcf3.gz 2.92 GB 4411f2138ace46a588c44eea00952d03
f6f0acfa13b67fe3997a7ae77f1c6c682ae1fcf3.gz.tbi 1.29 MB ecd3a8389cb2b9b53be3465f92c4e716
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 1a16efba541973e4b7fb460cc55b160b
statistics/