Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f77c34d49975fe47b3f6d0e849d360f7f8b67fa2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f77c34d49975fe47b3f6d0e849d360f7f8b67fa2
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTAGGAGTTGGCGTG-2517_A05, GAGCTTGTCGCTATAA-2517_A05, CGGGACAAGGTCCGTA-2517_A05, CCGGTTAAGCTCATAA-2517_A05, GTAGGTGCACAAAGGT-2517_A05 (top 5 of 3150 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f77c34d49975fe47b3f6d0e849d360f7f8b67fa2.gz 1.82 GB 9214a315f84aa98b45a21f88b9d9673f
f77c34d49975fe47b3f6d0e849d360f7f8b67fa2.gz.tbi 1.1 MB 8fd9670a0abb55001b3f750fc6fd7bf4
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB fce1a910515bc24874d04582750acc31
statistics/