Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGGCAATAGGATGATG-2289_F04, TAAGCCAGTTTCCGGC-2289_F04, ATGGCTGTCCGGGACT-2289_F04, ATTATCCTCCTTAGGG-2289_F04, CGAAATGAGCTCGCTT-2289_F04 (top 5 of 4415 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6.gz 2.14 GB a25203b37415cdd3c6ed01620e4ddd25
f8226349bdf9ef6838eb60e5cb750fdc8e03b9e6.gz.tbi 1.09 MB 5396ca4ba4f022d707aceeb0a3e1cf91
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB a1b14b811c5b562c93fbcd065d252684
statistics/