Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/fc3e7c0a0bcc9c1be4055b1e4db555b6e00e7efecontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: fc3e7c0a0bcc9c1be4055b1e4db555b6e00e7efe
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGAACAGAGGCATGTT-1075_B04, CAGGATGCATAATCGT-1075_B04, CTCCTCACAACTGGCT-1075_B04, CTGATCACACGTAAGG-1075_B04, TAAGCTATCCTAATTC-1075_B04 (top 5 of 4615 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
fc3e7c0a0bcc9c1be4055b1e4db555b6e00e7efe.gz 1.3 GB aaac4f4f5c9dac4a9dfbd06323a54d79
fc3e7c0a0bcc9c1be4055b1e4db555b6e00e7efe.gz.tbi 866.27 KB 4a63637fb7befde4b7adf8ca6c297af1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 9870060560db9cde4d5eb1049ead3fa0
statistics/