Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/fe73a2757d8d05fbb09a5d1d9532eda0be0a40facontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGGCAGGTCATTACGA-2372_A04, ATAAGTCGTGACATAT-2372_A04, GGCAGGATCTCTAGCC-2372_A04, CCGGTAGGTGTGTCCC-2372_A04, GTTTGCTGTTGCAATG-2372_A04 (top 5 of 3050 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa.gz 1.58 GB 5f5dd210ad6f6fbccbbadea0335988c4
fe73a2757d8d05fbb09a5d1d9532eda0be0a40fa.gz.tbi 964.18 KB b394d1bb245213a527ee2f4385777db3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB ee754c56224a574834f24ffa279833a9
statistics/