Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/02345d0e5642fa4ede7968c3f7c77b68b3b64498content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 02345d0e5642fa4ede7968c3f7c77b68b3b64498
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGCTATGTCAACCAAC-1, GGGTTACGTTCACCCA-1, GTGTTACAGTATCGCG-1, CTAATCCGTCCCGAAG-1, GGTTGCTCATAAAGCA-1 (top 5 of 4896 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
02345d0e5642fa4ede7968c3f7c77b68b3b64498.gz 1.85 GB 87f9c93dadd71f8df1c625af78d97e32
02345d0e5642fa4ede7968c3f7c77b68b3b64498.gz.tbi 1012.43 KB e94ffa399d8cb1cbba0c2759c0f2f834
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b26cd64dea3f57ec4f5b15fa8913ee69
statistics/