Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/215a0dfb830e7669a25d2996f97106c5192226e4content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 215a0dfb830e7669a25d2996f97106c5192226e4
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCCTGTTCATTGTCAG-1, CATCCTCAGGCTAATC-1, CGAAATGAGCAGGTGG-1, TGTTATGAGCGAGGTG-1, AACCTCCTCACGAATC-1 (top 5 of 5666 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
215a0dfb830e7669a25d2996f97106c5192226e4.gz 1.61 GB e2f26312bf11a7e2c9d765dbbba8b329
215a0dfb830e7669a25d2996f97106c5192226e4.gz.tbi 963.65 KB 5e5328aa00be9cd5b574ac2f19d1479a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB cfeb081cb983318d2e04a0f8b75d53dd
statistics/