Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/2265b3ede2fa4031ffcce7476e2e0d74c7743768content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 2265b3ede2fa4031ffcce7476e2e0d74c7743768
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTGCATTAGGAGCACG-1, AGCGCCTAGGTAAGGC-1, GATTGGTTCTCACAAA-1, AAGGCCCTCGTTAAGC-1, GCTGACCAGGTTACGT-1 (top 5 of 6097 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
2265b3ede2fa4031ffcce7476e2e0d74c7743768.gz 3.65 GB 9549f83c18de4a355fc527d65a02ed03
2265b3ede2fa4031ffcce7476e2e0d74c7743768.gz.tbi 1.42 MB a18963a93a67f9a8fcfc72aea513b07b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 6d3a43ea91e3fb2e5748edcd4afbaee8
statistics/