Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/36c190e9e62974ee4454085dc4d3b27b83c7739dcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 36c190e9e62974ee4454085dc4d3b27b83c7739d
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AATTAGCGTAGTTAAC-1, CTTAGGAGTTCGGTAA-1, GAAACTGAGCCGCAAC-1, GTTTGTTTCTTTGAGA-1, CCTTCGTAGCAAGATG-1 (top 5 of 6417 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
36c190e9e62974ee4454085dc4d3b27b83c7739d.gz 2.34 GB 4552733c634dcda688d48089f2d96551
36c190e9e62974ee4454085dc4d3b27b83c7739d.gz.tbi 1.13 MB d36ab7712c4fc9ef09c7d48b0d3da4ac
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 907f147f08569aaa73852fd52dd1fe9a
statistics/