Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/3738c40f955491c83b2ecec9d0fe332b78d9f134content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3738c40f955491c83b2ecec9d0fe332b78d9f134
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATCCCGCGTACCGGAT-1, GGTACTTAGGCATGTT-1, AAGTGTTGTGCTGTAA-1, ACTTACTTCAGGCCTA-1, GCAATAGAGACAAACG-1 (top 5 of 6587 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3738c40f955491c83b2ecec9d0fe332b78d9f134.gz 2.5 GB 063a5ec6def643dcbe8b324bd55aec24
3738c40f955491c83b2ecec9d0fe332b78d9f134.gz.tbi 1.15 MB 7605581bf713bd6489f8fb695f9fe140
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 66f9e70f9b66a099a6dc1801b3b9bd05
statistics/