Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/3dcfc8f873b5cc75274575e4f4ee380b88e2c7ebcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 3dcfc8f873b5cc75274575e4f4ee380b88e2c7eb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGATGAAGTATCTGGA-1, TGCATGAGTCACCTAT-1, AGCCGCTAGTTTGCGG-1, GCTTGTTGTGTCCTGC-1, CTAATTGAGGTCAAAG-1 (top 5 of 5528 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
3dcfc8f873b5cc75274575e4f4ee380b88e2c7eb.gz 2.73 GB 9bb909ebd8f2106cd6b04bd28e72d98c
3dcfc8f873b5cc75274575e4f4ee380b88e2c7eb.gz.tbi 1.2 MB f7b2f155c6838401abfd5b635f5037cc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 76be72bd5a8f2a340e5dbe591c614109
statistics/