Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/475aee3773cf5b9028b08418b944d4f66c4f7083content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 475aee3773cf5b9028b08418b944d4f66c4f7083
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCACGCTAGGTTTACA-1, CGCCTGTGTTAGGTTG-1, GCCTTTATCTCACTAT-1, TCTACCTCAGCACGAA-1, GGCTTCAAGGCGAAAC-1 (top 5 of 6322 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
475aee3773cf5b9028b08418b944d4f66c4f7083.gz 2.93 GB 1e8337b4550034feadbc0a8e35a7b7c5
475aee3773cf5b9028b08418b944d4f66c4f7083.gz.tbi 1.27 MB f7463ad77d85ff3f5648ad622997ebd7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB af4825c7e768c54800e7a7d5878efd28
statistics/