Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/50c29f65910dc6faa1990f1ff9601c25bb909822content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 50c29f65910dc6faa1990f1ff9601c25bb909822
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTTAGCGTTGGTGAC-1, AAATCCGGTGTGAGAG-1, GAAAGGCTCTTGACCC-1, TTGGTGAGTGTTTGTC-1, TATATCCTCCTAGTTT-1 (top 5 of 2894 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
50c29f65910dc6faa1990f1ff9601c25bb909822.gz 1.15 GB 06b8122db6ce69c09ec3a54f2178a11a
50c29f65910dc6faa1990f1ff9601c25bb909822.gz.tbi 822.31 KB 2ea46610350e02f585cf411ce1b322e5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB b934c466513e08b2edb76fc5182d3ddf
statistics/