Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/56a3779592d1a5f694aed91af2c315df789dd3fbcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 56a3779592d1a5f694aed91af2c315df789dd3fb
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTGTCCAAGACTTACA-1, TTTGACCGTTAACGGC-1, ACAGGTAAGACTTATG-1, GTCCTCCCAGTCTAGC-1, AGGATATAGTTTCCGC-1 (top 5 of 7332 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
56a3779592d1a5f694aed91af2c315df789dd3fb.gz 1.98 GB 8462b2f8c170c652a3f5f1f366ea8b23
56a3779592d1a5f694aed91af2c315df789dd3fb.gz.tbi 1.02 MB fa37374336b7ac71daabfa614ef5f094
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB d1826656e1d61f25e814b1a2a5a417d2
statistics/