Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/5943069e5a3ef965bee16d7fd5e8326e1ff13587content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5943069e5a3ef965bee16d7fd5e8326e1ff13587
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTCGCTCCATTAAGCT-1, TGCCATTGTCTCAGCC-1, ATTTGCAAGCGAGTAA-1, ACTCCTCAGGTTTGAC-1, CCCAAACCACTAGCGT-1 (top 5 of 4854 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5943069e5a3ef965bee16d7fd5e8326e1ff13587.gz 1.84 GB d212253a57a6f7372ccaef557386d859
5943069e5a3ef965bee16d7fd5e8326e1ff13587.gz.tbi 1008.83 KB f34e37581fa3448b76c7630789e16b21
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 8f595d04bdc0a88175521929761a21dc
statistics/