Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/5ea5e6af61e6470a73a31014fe6f355a5c443e42content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 5ea5e6af61e6470a73a31014fe6f355a5c443e42
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATGAGGGTTACTTCA-1, GATTTGCAGACTATTG-1, ACATAGCTCGAGCTAT-1, AGCAGGTAGGGCCACT-1, ACGTTACAGCATGTTA-1 (top 5 of 7219 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
5ea5e6af61e6470a73a31014fe6f355a5c443e42.gz 3.72 GB 05dd1e3d0ae6fffa5392e4eddddee49e
5ea5e6af61e6470a73a31014fe6f355a5c443e42.gz.tbi 1.42 MB a436d1f822f4dc8bf188535282452f8e
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 45f8717bd32f3c9288e171d6daf693c8
statistics/