Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/702cdc44fb30f71936c4c908508bb4d849e19017content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 702cdc44fb30f71936c4c908508bb4d849e19017
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGAGGAACAGGCTAGA-1, TGGCCTGCACCTGCCT-1, TCAGCGATCAAACACC-1, TCGCGCACAACCGCCA-1, ATTATCCTCCGGAACC-1 (top 5 of 4671 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
702cdc44fb30f71936c4c908508bb4d849e19017.gz 1.6 GB 74df9b01e807ce9a0e8b608be809a002
702cdc44fb30f71936c4c908508bb4d849e19017.gz.tbi 957.7 KB 74ab1929df68d0cdceabbdf6e893e125
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 3adbae85abe6b3fda259fb25a422eb4b
statistics/