Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/86af4e5bdd31f92b8a1e2d7cc3d65c513b954d91content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 86af4e5bdd31f92b8a1e2d7cc3d65c513b954d91
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTCTATGCAGGAATCG-1, TACTAAGTCCTCAGCT-1, TGGCCATCAGCCAGTT-1, TGCAGGCTCCGCCTCA-1, TGCTTCCAGCTAAGTC-1 (top 5 of 3615 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
86af4e5bdd31f92b8a1e2d7cc3d65c513b954d91.gz 1.2 GB 9197162c1e01e48ff737f88c5e1cc38f
86af4e5bdd31f92b8a1e2d7cc3d65c513b954d91.gz.tbi 856.66 KB 379b18bfa94afdc33ab7d62432fde25a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 900c9f7c10102cb3832db2e62923b098
statistics/