Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/98a1ac90e04482f0fcb7cfcc88b81af3ba2372a7content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: 98a1ac90e04482f0fcb7cfcc88b81af3ba2372a7
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACTAATCCATGAGTTT-1, TCAGTAGGTTGCACGG-1, ACGTCCTTCCGCAAAT-1, ATAAGTCGTTAGCTGA-1, GTCGAGGAGAGAAGGG-1 (top 5 of 5400 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
98a1ac90e04482f0fcb7cfcc88b81af3ba2372a7.gz 2.47 GB 5db1b3eb7046aa6b475e33b5214064bb
98a1ac90e04482f0fcb7cfcc88b81af3ba2372a7.gz.tbi 1.16 MB b7be1673a29c86c5dd9e9af3f01a08b7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 60045a2cf80378abed0f475649564f35
statistics/