Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/a7a30397d5b5f8e0714b2fcb28097409d746bd61content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: a7a30397d5b5f8e0714b2fcb28097409d746bd61
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTAATTGAGGCATTGT-1, CATGGATTCAGCAAAG-1, GAGGTAGGTCTATCGT-1, TTATCCGTCCGTCCAT-1, CATTGTGCAGGCGAGT-1 (top 5 of 4157 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
a7a30397d5b5f8e0714b2fcb28097409d746bd61.gz 1.13 GB eaa138c54e02b7f05ceab8b4ed920f5b
a7a30397d5b5f8e0714b2fcb28097409d746bd61.gz.tbi 826.1 KB 7028b16318faa2be5901ce5aa125f968
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 58f62643eef16a7c6c719bd8d82008ae
statistics/