Resource

Id summary/johansen2025Crossspecies/atac_fragments/macaque/d3965483a9a9f0bd51c239c8cd7fbbe0c5f7df93content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: d3965483a9a9f0bd51c239c8cd7fbbe0c5f7df93
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTGGCTAAGCGAGCGA-1, GCTAGCTCAATAGTCT-1, CGCATTACACAACCTA-1, GCTGTGATCCTCGATC-1, AGAACCGCAAGGTCCT-1 (top 5 of 4945 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
d3965483a9a9f0bd51c239c8cd7fbbe0c5f7df93.gz 1.54 GB 9f070718386da01df33c2bbc8063bd1d
d3965483a9a9f0bd51c239c8cd7fbbe0c5f7df93.gz.tbi 942.07 KB 965af3bbeb3b3cdc8d09f6b2b3be3e6a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 46f9070965148d08fb9fb11a6cccbf74
statistics/