Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0005_2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0005_2
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTGTTCCCAGGCTAGA-P0005_2, TTAGGCCCAGTGAACG-P0005_2, CTGATCACAGTTTGTG-P0005_2, GCAAGTCGTTTGGGTA-P0005_2, GCCTCGACAGCAGGTA-P0005_2 (top 5 of 2665 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0005_2.gz 396.5 MB 63e44c458704a79a8e7abc9dbf3b6414
P0005_2.gz.tbi 579.9 KB b60f00360a4119db3da27c7bb7aacb75
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.3 KB 9a82b8ddd3aa4796fe8596214e7fc924
statistics/