Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0009_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0009_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TATATCCTCGCCTGTT-P0009_1, TCGCATTGTGCGCAAT-P0009_1, CGTGAGGAGCGCCTTT-P0009_1, GACCGTTCACTTCACT-P0009_1, ATGTTGTCAAGGCCAA-P0009_1 (top 5 of 2210 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0009_1.h5ad.gz 558.55 MB 493fd21ee53146a93ca6ffebf886bbe3
P0009_1.h5ad.gz.tbi 625.78 KB bd7a616f98c9c665a000c6ca24b215a1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 7e2a86d4e94be43074f8bc26fe7fec73
statistics/