Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0010_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0010_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATCCGTCAGGGAGGA-P0010_1, GTTCATTTCATTACGA-P0010_1, CAAGCTAGTTCAAGAT-P0010_1, TACAGCTAGTGAGCGG-P0010_1, AAGGCCCTCTTGCAGG-P0010_1 (top 5 of 3013 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0010_1.h5ad.gz 762.19 MB d72a21b5ad980b7a4bba7bb7ec5127c7
P0010_1.h5ad.gz.tbi 686.0 KB fdc456eed8e92608545be1385de3a6d5
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB dde7a6f2f3a7645d21cc98cef2f98324
statistics/