Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0011_1.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0011_1.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATAATCGTATTACCC-P0011_1, AGTAACCTCGCTATAA-P0011_1, TATTGACCATGAATAG-P0011_1, TAGTGGCGTGGAAGGC-P0011_1, AGCGCTCAGGCTTAGT-P0011_1 (top 5 of 2452 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0011_1.h5ad.gz 884.73 MB 4a556cbf979e8630e073d7d1bd6402d9
P0011_1.h5ad.gz.tbi 724.28 KB 32a8ade76333a7211598c58455311037
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB af06e0aa2262e7a71033e8054ac71f63
statistics/