Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0011_2.h5adcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0011_2.h5ad
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCTAAGGGTGACATGC-P0011_2, ACGCTTGAGCTATATG-P0011_2, AGTGAGTCATTAAACC-P0011_2, CTTTAGTTCCCATAGG-P0011_2, TAGCTTAAGAAGCTAG-P0011_2 (top 5 of 4434 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0011_2.h5ad.gz 989.98 MB 3f8837c73431ca1661f0a1370bbe726d
P0011_2.h5ad.gz.tbi 753.43 KB 336a0e3dcc55c42d99f3a5d377696ac8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 857c0731dfe3f3bcc62b2a3fd91e4d82
statistics/