Resource

Id summary/johansen2025Crossspecies/atac_fragments/marmoset/P0011_2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: P0011_2
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCTAAGGGTGACATGC-P0011_2, GGATTATGTGCACGCA-P0011_2, GCTTAAATCACGTTAA-P0011_2, CCTGTATGTCGCAAAC-P0011_2, ACGCTTGAGCTATATG-P0011_2 (top 5 of 6914 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
P0011_2.gz 1.84 GB e89437b0576a1c202669ac8799e4a3c6
P0011_2.gz.tbi 1007.16 KB 24501824f5a86908cdbed6e27c1e4601
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.3 KB 44e5470ff9f009bc551b3c04b4ddf65e
statistics/